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<a href="chromosome__crispmatrix_8hpp.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;</div><div class="line"><a name="l00012"></a><span class="lineno">   12</span>&#160;<span class="preprocessor">#ifndef CHROMOSOME_BIT_CRISP_MATRIX_HPP</span></div><div class="line"><a name="l00013"></a><span class="lineno">   13</span>&#160;<span class="preprocessor">#define CHROMOSOME_BIT_CRISP_MATRIX_HPP</span></div><div class="line"><a name="l00014"></a><span class="lineno">   14</span>&#160;</div><div class="line"><a name="l00015"></a><span class="lineno">   15</span>&#160;<span class="preprocessor">#include &quot;<a class="code" href="chromosome__base_8hpp.html">chromosome_base.hpp</a>&quot;</span></div><div class="line"><a name="l00016"></a><span class="lineno">   16</span>&#160;<span class="preprocessor">#include &quot;<a class="code" href="crisp__matrix_8hpp.html">crisp_matrix.hpp</a>&quot;</span></div><div class="line"><a name="l00017"></a><span class="lineno">   17</span>&#160;<span class="preprocessor">#include &quot;<a class="code" href="verbose__global_8hpp.html">verbose_global.hpp</a>&quot;</span></div><div class="line"><a name="l00018"></a><span class="lineno">   18</span>&#160;</div><div class="line"><a name="l00019"></a><span class="lineno">   19</span>&#160;</div><div class="line"><a name="l00029"></a><span class="lineno">   29</span>&#160;<span class="keyword">namespace </span><a class="code" href="namespacegaencode.html">gaencode</a> {</div><div class="line"><a name="l00030"></a><span class="lineno">   30</span>&#160;</div><div class="line"><a name="l00035"></a><span class="lineno">   35</span>&#160;<span class="keyword">template</span> &lt; <span class="keyword">class </span>T_BITSIZE,</div><div class="line"><a name="l00036"></a><span class="lineno">   36</span>&#160;           <span class="keyword">class </span>T_CLUSTERIDX,</div><div class="line"><a name="l00037"></a><span class="lineno">   37</span>&#160;           <span class="keyword">class </span>T_METRIC</div><div class="line"><a name="l00038"></a><span class="lineno">   38</span>&#160;           &gt;</div><div class="line"><a name="l00039"></a><span class="lineno"><a class="line" href="classgaencode_1_1_chromosome_crisp_matrix.html">   39</a></span>&#160;<span class="keyword">class </span><a class="code" href="classgaencode_1_1_chromosome_crisp_matrix.html">ChromosomeCrispMatrix</a></div><div class="line"><a name="l00040"></a><span class="lineno">   40</span>&#160;  : <span class="keyword">public</span> <a class="code" href="classgaencode_1_1_chromosome_base.html">ChromosomeBase</a>&lt;T_METRIC&gt; </div><div class="line"><a name="l00041"></a><span class="lineno">   41</span>&#160;  , <span class="keyword">public</span> <a class="code" href="classmat_1_1_crisp_matrix.html">mat::CrispMatrix</a>&lt;T_BITSIZE,T_CLUSTERIDX&gt; </div><div class="line"><a name="l00042"></a><span class="lineno">   42</span>&#160;{</div><div class="line"><a name="l00043"></a><span class="lineno">   43</span>&#160;<span class="keyword">public</span>:</div><div class="line"><a name="l00044"></a><span class="lineno"><a class="line" href="classgaencode_1_1_chromosome_crisp_matrix.html#ae1445eeb4b095c511e08f651ef8df8db">   44</a></span>&#160;  <a class="code" href="classgaencode_1_1_chromosome_crisp_matrix.html#ae1445eeb4b095c511e08f651ef8df8db">ChromosomeCrispMatrix</a>()</div><div class="line"><a name="l00045"></a><span class="lineno">   45</span>&#160;    : <a class="code" href="classgaencode_1_1_chromosome_base.html">ChromosomeBase</a>&lt;T_METRIC&gt;()</div><div class="line"><a name="l00046"></a><span class="lineno">   46</span>&#160;    , <a class="code" href="namespacemat.html">mat</a>::<a class="code" href="classmat_1_1_crisp_matrix.html#a26594f31976c4e4c483633dafc5ac079">CrispMatrix</a>&lt;T_BITSIZE,T_CLUSTERIDX&gt;()</div><div class="line"><a name="l00047"></a><span class="lineno">   47</span>&#160;  { }</div><div class="line"><a name="l00048"></a><span class="lineno">   48</span>&#160;  </div><div class="line"><a name="l00049"></a><span class="lineno">   49</span>&#160;  <a class="code" href="classgaencode_1_1_chromosome_crisp_matrix.html#ae1445eeb4b095c511e08f651ef8df8db">ChromosomeCrispMatrix</a></div><div class="line"><a name="l00050"></a><span class="lineno"><a class="line" href="classgaencode_1_1_chromosome_crisp_matrix.html#ad97c438b552c26a60fc8cec6a7cf0b7c">   50</a></span>&#160;  (<span class="keyword">const</span> <a class="code" href="common_8hpp.html#a3f6c33fb604556cdc425e7aa2289d009">uintidx</a> aiuintidx_numRows, </div><div class="line"><a name="l00051"></a><span class="lineno">   51</span>&#160;   <span class="keyword">const</span> <a class="code" href="common_8hpp.html#a3f6c33fb604556cdc425e7aa2289d009">uintidx</a> aiuintidx_numColumns</div><div class="line"><a name="l00052"></a><span class="lineno">   52</span>&#160;   )</div><div class="line"><a name="l00053"></a><span class="lineno">   53</span>&#160;    : <a class="code" href="classgaencode_1_1_chromosome_base.html">ChromosomeBase&lt;T_METRIC&gt;</a>()</div><div class="line"><a name="l00054"></a><span class="lineno">   54</span>&#160;    , <a class="code" href="classmat_1_1_crisp_matrix.html">mat::CrispMatrix&lt;T_BITSIZE,T_CLUSTERIDX&gt;</a>(aiuintidx_numRows,aiuintidx_numColumns)</div><div class="line"><a name="l00055"></a><span class="lineno">   55</span>&#160;  { }</div><div class="line"><a name="l00056"></a><span class="lineno">   56</span>&#160;</div><div class="line"><a name="l00057"></a><span class="lineno">   57</span>&#160;    <span class="comment">//copy constructor</span></div><div class="line"><a name="l00058"></a><span class="lineno">   58</span>&#160;  <a class="code" href="classgaencode_1_1_chromosome_crisp_matrix.html#ae1445eeb4b095c511e08f651ef8df8db">ChromosomeCrispMatrix</a></div><div class="line"><a name="l00059"></a><span class="lineno"><a class="line" href="classgaencode_1_1_chromosome_crisp_matrix.html#a5c70c7ec5bf52e639b6dbdc5333a3895">   59</a></span>&#160;  (<span class="keyword">const</span> <a class="code" href="classgaencode_1_1_chromosome_crisp_matrix.html">ChromosomeCrispMatrix&lt;T_BITSIZE,T_CLUSTERIDX,T_METRIC&gt;</a>&amp; aichrombitcrispmatrix_b)</div><div class="line"><a name="l00060"></a><span class="lineno">   60</span>&#160;    : <a class="code" href="classgaencode_1_1_chromosome_base.html">ChromosomeBase&lt;T_METRIC&gt;</a>(aichrombitcrispmatrix_b)</div><div class="line"><a name="l00061"></a><span class="lineno">   61</span>&#160;    , <a class="code" href="classmat_1_1_crisp_matrix.html">mat::CrispMatrix&lt;T_BITSIZE,T_CLUSTERIDX&gt;</a>(aichrombitcrispmatrix_b)</div><div class="line"><a name="l00062"></a><span class="lineno">   62</span>&#160;  { }</div><div class="line"><a name="l00063"></a><span class="lineno">   63</span>&#160;</div><div class="line"><a name="l00064"></a><span class="lineno">   64</span>&#160;  <span class="comment">//move constructor</span></div><div class="line"><a name="l00065"></a><span class="lineno">   65</span>&#160;  <a class="code" href="classgaencode_1_1_chromosome_crisp_matrix.html#ae1445eeb4b095c511e08f651ef8df8db">ChromosomeCrispMatrix</a></div><div class="line"><a name="l00066"></a><span class="lineno"><a class="line" href="classgaencode_1_1_chromosome_crisp_matrix.html#ad4ce73f0d53d84be030612cffddc9d5f">   66</a></span>&#160;  (<a class="code" href="classgaencode_1_1_chromosome_crisp_matrix.html">ChromosomeCrispMatrix&lt;T_BITSIZE,T_CLUSTERIDX,T_METRIC&gt;</a> &amp;&amp;aichrombitcrispmatrix_b)</div><div class="line"><a name="l00067"></a><span class="lineno">   67</span>&#160;    : <a class="code" href="classgaencode_1_1_chromosome_base.html">ChromosomeBase&lt;T_METRIC&gt;</a>(aichrombitcrispmatrix_b)</div><div class="line"><a name="l00068"></a><span class="lineno">   68</span>&#160;    , <a class="code" href="classmat_1_1_crisp_matrix.html">mat::CrispMatrix&lt;T_BITSIZE,T_CLUSTERIDX&gt;</a>(aichrombitcrispmatrix_b)</div><div class="line"><a name="l00069"></a><span class="lineno">   69</span>&#160;  { }</div><div class="line"><a name="l00070"></a><span class="lineno">   70</span>&#160;</div><div class="line"><a name="l00071"></a><span class="lineno"><a class="line" href="classgaencode_1_1_chromosome_crisp_matrix.html#a478f98d9ac5c69fa21beca89fc41f75f">   71</a></span>&#160;  <span class="keyword">virtual</span> <a class="code" href="classgaencode_1_1_chromosome_crisp_matrix.html#a478f98d9ac5c69fa21beca89fc41f75f">~ChromosomeCrispMatrix</a>()</div><div class="line"><a name="l00072"></a><span class="lineno">   72</span>&#160;  {</div><div class="line"><a name="l00073"></a><span class="lineno">   73</span>&#160;  }</div><div class="line"><a name="l00074"></a><span class="lineno">   74</span>&#160;  </div><div class="line"><a name="l00075"></a><span class="lineno">   75</span>&#160;  <span class="comment">//move copy</span></div><div class="line"><a name="l00076"></a><span class="lineno">   76</span>&#160;  <a class="code" href="classgaencode_1_1_chromosome_crisp_matrix.html">ChromosomeCrispMatrix&lt;T_BITSIZE,T_CLUSTERIDX,T_METRIC&gt;</a>&amp; <span class="keyword">operator</span>=</div><div class="line"><a name="l00077"></a><span class="lineno"><a class="line" href="classgaencode_1_1_chromosome_crisp_matrix.html#a0f294777ae1317eca24bca18cba88e11">   77</a></span>&#160;  (<span class="keyword">const</span> <a class="code" href="classgaencode_1_1_chromosome_crisp_matrix.html">ChromosomeCrispMatrix&lt;T_BITSIZE,T_CLUSTERIDX,T_METRIC&gt;</a> &amp;aichrombitcrispmatrix_b)</div><div class="line"><a name="l00078"></a><span class="lineno">   78</span>&#160;  {</div><div class="line"><a name="l00079"></a><span class="lineno">   79</span>&#160;<span class="preprocessor">#ifdef __VERBOSE_YES</span></div><div class="line"><a name="l00080"></a><span class="lineno">   80</span>&#160;    <span class="keyword">const</span> <span class="keywordtype">char</span>* lpc_labelFunc = <span class="stringliteral">&quot;ChromosomeCrispMatrix::operator=&quot;</span>;</div><div class="line"><a name="l00081"></a><span class="lineno">   81</span>&#160;    ++geiinparam_verbose;</div><div class="line"><a name="l00082"></a><span class="lineno">   82</span>&#160;    <span class="keywordflow">if</span> ( geiinparam_verbose &lt;= geiinparam_verboseMax ) {</div><div class="line"><a name="l00083"></a><span class="lineno">   83</span>&#160;      std::cout &lt;&lt; lpc_labelFunc</div><div class="line"><a name="l00084"></a><span class="lineno">   84</span>&#160;                &lt;&lt; <span class="stringliteral">&quot;:  IN(&quot;</span> &lt;&lt; geiinparam_verbose &lt;&lt; <span class="stringliteral">&quot;)\n&quot;</span></div><div class="line"><a name="l00085"></a><span class="lineno">   85</span>&#160;                &lt;&lt; <span class="stringliteral">&quot;(input  ChromosomeCrispMatrix&lt;&gt;: &amp;[&quot;</span></div><div class="line"><a name="l00086"></a><span class="lineno">   86</span>&#160;                &lt;&lt;  &amp;aichrombitcrispmatrix_b</div><div class="line"><a name="l00087"></a><span class="lineno">   87</span>&#160;                &lt;&lt; <span class="stringliteral">&quot;]\n)&quot;</span></div><div class="line"><a name="l00088"></a><span class="lineno">   88</span>&#160;                &lt;&lt; std::endl;</div><div class="line"><a name="l00089"></a><span class="lineno">   89</span>&#160;    }</div><div class="line"><a name="l00090"></a><span class="lineno">   90</span>&#160;<span class="preprocessor">#endif //__VERBOSE_YES</span></div><div class="line"><a name="l00091"></a><span class="lineno">   91</span>&#160;    </div><div class="line"><a name="l00092"></a><span class="lineno">   92</span>&#160;    <span class="keywordflow">if</span>( <span class="keyword">this</span> !=  &amp;aichrombitcrispmatrix_b ){</div><div class="line"><a name="l00093"></a><span class="lineno">   93</span>&#160;      <a class="code" href="classgaencode_1_1_chromosome_base.html#a875b1a929b8a9225b5545146389190f0">ChromosomeBase&lt;T_METRIC&gt;::operator=</a>(aichrombitcrispmatrix_b);</div><div class="line"><a name="l00094"></a><span class="lineno">   94</span>&#160;      <a class="code" href="classmat_1_1_crisp_matrix.html#aa264a099ff76971ccbe9443b081ac732">mat::CrispMatrix&lt;T_BITSIZE,T_CLUSTERIDX&gt;::operator=</a>(aichrombitcrispmatrix_b);</div><div class="line"><a name="l00095"></a><span class="lineno">   95</span>&#160;    }</div><div class="line"><a name="l00096"></a><span class="lineno">   96</span>&#160;</div><div class="line"><a name="l00097"></a><span class="lineno">   97</span>&#160;<span class="preprocessor">#ifdef __VERBOSE_YES</span></div><div class="line"><a name="l00098"></a><span class="lineno">   98</span>&#160;    <span class="keywordflow">if</span> ( geiinparam_verbose &lt;= geiinparam_verboseMax ) {</div><div class="line"><a name="l00099"></a><span class="lineno">   99</span>&#160;      std::cout &lt;&lt; lpc_labelFunc</div><div class="line"><a name="l00100"></a><span class="lineno">  100</span>&#160;                &lt;&lt; <span class="stringliteral">&quot;: OUT(&quot;</span> &lt;&lt; geiinparam_verbose &lt;&lt; <span class="stringliteral">&quot;)\n&quot;</span>;</div><div class="line"><a name="l00101"></a><span class="lineno">  101</span>&#160;      std::ostringstream lostrstream_labelFunc;</div><div class="line"><a name="l00102"></a><span class="lineno">  102</span>&#160;      lostrstream_labelFunc &lt;&lt;  geverbosepc_labelstep</div><div class="line"><a name="l00103"></a><span class="lineno">  103</span>&#160;                            &lt;&lt; <span class="charliteral">&#39;:&#39;</span> &lt;&lt; lpc_labelFunc;</div><div class="line"><a name="l00104"></a><span class="lineno">  104</span>&#160;      <a class="code" href="classgaencode_1_1_chromosome_crisp_matrix.html#a6e9befdb269de13512334959c132e033">ChromosomeCrispMatrix&lt;T_BITSIZE,T_CLUSTERIDX,T_METRIC&gt;::print</a></div><div class="line"><a name="l00105"></a><span class="lineno">  105</span>&#160;        (std::cout,lostrstream_labelFunc.str().c_str(),<span class="charliteral">&#39;,&#39;</span>,<span class="charliteral">&#39;;&#39;</span>);</div><div class="line"><a name="l00106"></a><span class="lineno">  106</span>&#160;      std::cout &lt;&lt; std::endl;</div><div class="line"><a name="l00107"></a><span class="lineno">  107</span>&#160;    }</div><div class="line"><a name="l00108"></a><span class="lineno">  108</span>&#160;    --geiinparam_verbose;</div><div class="line"><a name="l00109"></a><span class="lineno">  109</span>&#160;<span class="preprocessor">#endif //__VERBOSE_YES</span></div><div class="line"><a name="l00110"></a><span class="lineno">  110</span>&#160;</div><div class="line"><a name="l00111"></a><span class="lineno">  111</span>&#160;    <span class="keywordflow">return</span> *<span class="keyword">this</span>;</div><div class="line"><a name="l00112"></a><span class="lineno">  112</span>&#160;  }</div><div class="line"><a name="l00113"></a><span class="lineno">  113</span>&#160; </div><div class="line"><a name="l00114"></a><span class="lineno">  114</span>&#160;  <span class="comment">//move asigned</span></div><div class="line"><a name="l00115"></a><span class="lineno">  115</span>&#160;  <a class="code" href="classgaencode_1_1_chromosome_crisp_matrix.html">ChromosomeCrispMatrix&lt;T_BITSIZE,T_CLUSTERIDX,T_METRIC&gt;</a>&amp; <span class="keyword">operator</span>=</div><div class="line"><a name="l00116"></a><span class="lineno"><a class="line" href="classgaencode_1_1_chromosome_crisp_matrix.html#afdb8b5f16a5bc7f1dc70735d5cc7d575">  116</a></span>&#160;  (<a class="code" href="classgaencode_1_1_chromosome_crisp_matrix.html">ChromosomeCrispMatrix&lt;T_BITSIZE,T_CLUSTERIDX,T_METRIC&gt;</a> &amp;&amp;aichrombitcrispmatrix_b)</div><div class="line"><a name="l00117"></a><span class="lineno">  117</span>&#160;  {</div><div class="line"><a name="l00118"></a><span class="lineno">  118</span>&#160;<span class="preprocessor">#ifdef __VERBOSE_YES</span></div><div class="line"><a name="l00119"></a><span class="lineno">  119</span>&#160;    <span class="keyword">const</span> <span class="keywordtype">char</span>* lpc_labelFunc = <span class="stringliteral">&quot;ChromosomeCrispMatrix::operatormove=&quot;</span>;</div><div class="line"><a name="l00120"></a><span class="lineno">  120</span>&#160;    ++geiinparam_verbose;</div><div class="line"><a name="l00121"></a><span class="lineno">  121</span>&#160;    <span class="keywordflow">if</span> ( geiinparam_verbose &lt;= geiinparam_verboseMax ) {</div><div class="line"><a name="l00122"></a><span class="lineno">  122</span>&#160;      std::cout &lt;&lt; lpc_labelFunc</div><div class="line"><a name="l00123"></a><span class="lineno">  123</span>&#160;                &lt;&lt; <span class="stringliteral">&quot;:  IN(&quot;</span> &lt;&lt; geiinparam_verbose &lt;&lt; <span class="stringliteral">&quot;)\n&quot;</span></div><div class="line"><a name="l00124"></a><span class="lineno">  124</span>&#160;                &lt;&lt; <span class="stringliteral">&quot;(input  ChromosomeCrispMatrix&lt;&gt;: &amp;&amp;[&quot;</span> &lt;&lt;  &amp;aichrombitcrispmatrix_b</div><div class="line"><a name="l00125"></a><span class="lineno">  125</span>&#160;                &lt;&lt; <span class="stringliteral">&quot;]\n)&quot;</span></div><div class="line"><a name="l00126"></a><span class="lineno">  126</span>&#160;                &lt;&lt; std::endl;</div><div class="line"><a name="l00127"></a><span class="lineno">  127</span>&#160;    }</div><div class="line"><a name="l00128"></a><span class="lineno">  128</span>&#160;<span class="preprocessor">#endif //__VERBOSE_YES</span></div><div class="line"><a name="l00129"></a><span class="lineno">  129</span>&#160;    </div><div class="line"><a name="l00130"></a><span class="lineno">  130</span>&#160;    <span class="keywordflow">if</span>( <span class="keyword">this</span> !=  &amp;aichrombitcrispmatrix_b ){</div><div class="line"><a name="l00131"></a><span class="lineno">  131</span>&#160;      <a class="code" href="classgaencode_1_1_chromosome_base.html#a875b1a929b8a9225b5545146389190f0">ChromosomeBase&lt;T_METRIC&gt;::operator=</a>(aichrombitcrispmatrix_b);</div><div class="line"><a name="l00132"></a><span class="lineno">  132</span>&#160;      <a class="code" href="classmat_1_1_crisp_matrix.html#aa264a099ff76971ccbe9443b081ac732">mat::CrispMatrix&lt;T_BITSIZE,T_CLUSTERIDX&gt;::operator=</a>(aichrombitcrispmatrix_b);</div><div class="line"><a name="l00133"></a><span class="lineno">  133</span>&#160;    }</div><div class="line"><a name="l00134"></a><span class="lineno">  134</span>&#160;</div><div class="line"><a name="l00135"></a><span class="lineno">  135</span>&#160;</div><div class="line"><a name="l00136"></a><span class="lineno">  136</span>&#160;<span class="preprocessor">#ifdef __VERBOSE_YES</span></div><div class="line"><a name="l00137"></a><span class="lineno">  137</span>&#160;    <span class="keywordflow">if</span> ( geiinparam_verbose &lt;= geiinparam_verboseMax ) {</div><div class="line"><a name="l00138"></a><span class="lineno">  138</span>&#160;      std::cout &lt;&lt; lpc_labelFunc</div><div class="line"><a name="l00139"></a><span class="lineno">  139</span>&#160;                &lt;&lt; <span class="stringliteral">&quot;: OUT(&quot;</span> &lt;&lt; geiinparam_verbose &lt;&lt; <span class="stringliteral">&quot;)\n&quot;</span>;</div><div class="line"><a name="l00140"></a><span class="lineno">  140</span>&#160;      std::ostringstream lostrstream_labelFunc;</div><div class="line"><a name="l00141"></a><span class="lineno">  141</span>&#160;      lostrstream_labelFunc &lt;&lt;  geverbosepc_labelstep</div><div class="line"><a name="l00142"></a><span class="lineno">  142</span>&#160;                            &lt;&lt; <span class="charliteral">&#39;:&#39;</span> &lt;&lt; lpc_labelFunc;</div><div class="line"><a name="l00143"></a><span class="lineno">  143</span>&#160;      <a class="code" href="classgaencode_1_1_chromosome_crisp_matrix.html#a6e9befdb269de13512334959c132e033">ChromosomeCrispMatrix&lt;T_BITSIZE,T_CLUSTERIDX,T_METRIC&gt;::print</a></div><div class="line"><a name="l00144"></a><span class="lineno">  144</span>&#160;        (std::cout,lostrstream_labelFunc.str().c_str(),<span class="charliteral">&#39;,&#39;</span>,<span class="charliteral">&#39;;&#39;</span>);</div><div class="line"><a name="l00145"></a><span class="lineno">  145</span>&#160;      std::cout &lt;&lt; std::endl;</div><div class="line"><a name="l00146"></a><span class="lineno">  146</span>&#160;    }</div><div class="line"><a name="l00147"></a><span class="lineno">  147</span>&#160;    --geiinparam_verbose;</div><div class="line"><a name="l00148"></a><span class="lineno">  148</span>&#160;<span class="preprocessor">#endif //__VERBOSE_YES</span></div><div class="line"><a name="l00149"></a><span class="lineno">  149</span>&#160;    </div><div class="line"><a name="l00150"></a><span class="lineno">  150</span>&#160;    <span class="keywordflow">return</span> *<span class="keyword">this</span>;</div><div class="line"><a name="l00151"></a><span class="lineno">  151</span>&#160;    </div><div class="line"><a name="l00152"></a><span class="lineno">  152</span>&#160;  }</div><div class="line"><a name="l00153"></a><span class="lineno">  153</span>&#160; </div><div class="line"><a name="l00154"></a><span class="lineno">  154</span>&#160;  <span class="keyword">virtual</span> <span class="keywordtype">void</span>  <a class="code" href="classgaencode_1_1_chromosome_crisp_matrix.html#a6e9befdb269de13512334959c132e033">print</a></div><div class="line"><a name="l00155"></a><span class="lineno"><a class="line" href="classgaencode_1_1_chromosome_crisp_matrix.html#a6e9befdb269de13512334959c132e033">  155</a></span>&#160;  (std::ostream &amp;os=std::cout,</div><div class="line"><a name="l00156"></a><span class="lineno">  156</span>&#160;   <span class="keyword">const</span> <span class="keywordtype">char</span> *aipc_label   = <span class="stringliteral">&quot;&quot;</span>,</div><div class="line"><a name="l00157"></a><span class="lineno">  157</span>&#160;   <span class="keyword">const</span> <span class="keywordtype">char</span> aic_delimCoef =<span class="charliteral">&#39;,&#39;</span>,</div><div class="line"><a name="l00158"></a><span class="lineno">  158</span>&#160;   <span class="keyword">const</span> <span class="keywordtype">char</span> aic_delimRow  =<span class="charliteral">&#39;\n&#39;</span></div><div class="line"><a name="l00159"></a><span class="lineno">  159</span>&#160;   ) <span class="keyword">const</span></div><div class="line"><a name="l00160"></a><span class="lineno">  160</span>&#160;  {</div><div class="line"><a name="l00161"></a><span class="lineno">  161</span>&#160;    </div><div class="line"><a name="l00162"></a><span class="lineno">  162</span>&#160;<span class="preprocessor">#if defined(__VERBOSE_YES)</span></div><div class="line"><a name="l00163"></a><span class="lineno">  163</span>&#160;    std::string  lpc_labelChrom(<span class="stringliteral">&quot;CHROMOSOMEBITMATRIX&quot;</span>);</div><div class="line"><a name="l00164"></a><span class="lineno">  164</span>&#160;    <a class="code" href="classgaencode_1_1_chromosome_base.html#ab7a374a062ba8b5c6b4e674bae9a8299">ChromosomeBase&lt;T_METRIC&gt;::print</a>(os,aipc_label);</div><div class="line"><a name="l00165"></a><span class="lineno">  165</span>&#160;    os &lt;&lt; <span class="charliteral">&#39;,&#39;</span>;</div><div class="line"><a name="l00166"></a><span class="lineno">  166</span>&#160;    <a class="code" href="classmat_1_1_bit_matrix.html#ab66a697bd20fd702cb32494da920b1af">mat::BitMatrix&lt;T_BITSIZE&gt;::print</a>(os,lpc_labelChrom.c_str());</div><div class="line"><a name="l00167"></a><span class="lineno">  167</span>&#160;<span class="preprocessor">#else</span></div><div class="line"><a name="l00168"></a><span class="lineno">  168</span>&#160;    <a class="code" href="classgaencode_1_1_chromosome_base.html#ab7a374a062ba8b5c6b4e674bae9a8299">ChromosomeBase&lt;T_METRIC&gt;::print</a>(os,aipc_label,aic_delimCoef,aic_delimRow);</div><div class="line"><a name="l00169"></a><span class="lineno">  169</span>&#160;    os &lt;&lt; <span class="charliteral">&#39;,&#39;</span>;</div><div class="line"><a name="l00170"></a><span class="lineno">  170</span>&#160;    <a class="code" href="classmat_1_1_bit_matrix.html#ab66a697bd20fd702cb32494da920b1af">mat::BitMatrix&lt;T_BITSIZE&gt;::print</a>(os);</div><div class="line"><a name="l00171"></a><span class="lineno">  171</span>&#160;<span class="preprocessor">#endif</span></div><div class="line"><a name="l00172"></a><span class="lineno">  172</span>&#160;    </div><div class="line"><a name="l00173"></a><span class="lineno">  173</span>&#160;  }</div><div class="line"><a name="l00174"></a><span class="lineno">  174</span>&#160;</div><div class="line"><a name="l00175"></a><span class="lineno">  175</span>&#160;  <span class="keyword">friend</span> std::ostream&amp; <span class="keyword">operator</span>&lt;&lt;</div><div class="line"><a name="l00176"></a><span class="lineno"><a class="line" href="classgaencode_1_1_chromosome_crisp_matrix.html#a95a414977d1649a51acc5237d799d0d2">  176</a></span>&#160;  (std::ostream&amp; os, </div><div class="line"><a name="l00177"></a><span class="lineno">  177</span>&#160;   <span class="keyword">const</span> <a class="code" href="classgaencode_1_1_chromosome_crisp_matrix.html">ChromosomeCrispMatrix&lt;T_BITSIZE,T_CLUSTERIDX,T_METRIC&gt;</a> &amp;aichrombitcrispmatrix_b)</div><div class="line"><a name="l00178"></a><span class="lineno">  178</span>&#160;  {</div><div class="line"><a name="l00179"></a><span class="lineno">  179</span>&#160;    aichrombitcrispmatrix_b.<a class="code" href="classgaencode_1_1_chromosome_crisp_matrix.html#a6e9befdb269de13512334959c132e033">print</a>(os,<span class="stringliteral">&quot;&quot;</span>); </div><div class="line"><a name="l00180"></a><span class="lineno">  180</span>&#160;    </div><div class="line"><a name="l00181"></a><span class="lineno">  181</span>&#160;    <span class="keywordflow">return</span> os;</div><div class="line"><a name="l00182"></a><span class="lineno">  182</span>&#160;  }</div><div class="line"><a name="l00183"></a><span class="lineno">  183</span>&#160;</div><div class="line"><a name="l00184"></a><span class="lineno">  184</span>&#160; </div><div class="line"><a name="l00185"></a><span class="lineno">  185</span>&#160;<span class="keyword">protected</span>:</div><div class="line"><a name="l00186"></a><span class="lineno">  186</span>&#160;</div><div class="line"><a name="l00187"></a><span class="lineno">  187</span>&#160;  </div><div class="line"><a name="l00188"></a><span class="lineno">  188</span>&#160;}; <span class="comment">/*ChromosomeCrispMatrix*/</span></div><div class="line"><a name="l00189"></a><span class="lineno">  189</span>&#160;</div><div class="line"><a name="l00190"></a><span class="lineno">  190</span>&#160;} <span class="comment">/*END namespace gaencode*/</span></div><div class="line"><a name="l00191"></a><span class="lineno">  191</span>&#160;</div><div class="line"><a name="l00192"></a><span class="lineno">  192</span>&#160;<span class="preprocessor">#endif  </span><span class="comment">/*CHROMOSOME_BIT_CRISP_MATRIX_HPP*/</span><span class="preprocessor"></span></div><div class="ttc" id="classgaencode_1_1_chromosome_crisp_matrix_html_ae1445eeb4b095c511e08f651ef8df8db"><div class="ttname"><a href="classgaencode_1_1_chromosome_crisp_matrix.html#ae1445eeb4b095c511e08f651ef8df8db">gaencode::ChromosomeCrispMatrix::ChromosomeCrispMatrix</a></div><div class="ttdeci">ChromosomeCrispMatrix()</div><div class="ttdef"><b>Definition:</b> <a href="chromosome__crispmatrix_8hpp_source.html#l00044">chromosome_crispmatrix.hpp:44</a></div></div>
<div class="ttc" id="classgaencode_1_1_chromosome_crisp_matrix_html"><div class="ttname"><a href="classgaencode_1_1_chromosome_crisp_matrix.html">gaencode::ChromosomeCrispMatrix</a></div><div class="ttdoc">Chromosome bit crisp matrix.</div><div class="ttdef"><b>Definition:</b> <a href="chromosome__crispmatrix_8hpp_source.html#l00039">chromosome_crispmatrix.hpp:39</a></div></div>
<div class="ttc" id="common_8hpp_html_a3f6c33fb604556cdc425e7aa2289d009"><div class="ttname"><a href="common_8hpp.html#a3f6c33fb604556cdc425e7aa2289d009">uintidx</a></div><div class="ttdeci">uint32_t uintidx</div><div class="ttdef"><b>Definition:</b> <a href="common_8hpp_source.html#l00020">common.hpp:20</a></div></div>
<div class="ttc" id="classmat_1_1_crisp_matrix_html_a26594f31976c4e4c483633dafc5ac079"><div class="ttname"><a href="classmat_1_1_crisp_matrix.html#a26594f31976c4e4c483633dafc5ac079">mat::CrispMatrix::CrispMatrix</a></div><div class="ttdeci">CrispMatrix()</div><div class="ttdef"><b>Definition:</b> <a href="crisp__matrix_8hpp_source.html#l00038">crisp_matrix.hpp:38</a></div></div>
<div class="ttc" id="classgaencode_1_1_chromosome_base_html"><div class="ttname"><a href="classgaencode_1_1_chromosome_base.html">gaencode::ChromosomeBase</a></div><div class="ttdoc">Chromosome Base define basic attributes for a chromosome.</div><div class="ttdef"><b>Definition:</b> <a href="chromosome__base_8hpp_source.html#l00036">chromosome_base.hpp:36</a></div></div>
<div class="ttc" id="crisp__matrix_8hpp_html"><div class="ttname"><a href="crisp__matrix_8hpp.html">crisp_matrix.hpp</a></div><div class="ttdoc">crisp matrix</div></div>
<div class="ttc" id="classgaencode_1_1_chromosome_base_html_ab7a374a062ba8b5c6b4e674bae9a8299"><div class="ttname"><a href="classgaencode_1_1_chromosome_base.html#ab7a374a062ba8b5c6b4e674bae9a8299">gaencode::ChromosomeBase::print</a></div><div class="ttdeci">virtual void print(std::ostream &amp;os=std::cout, const char *aipc_label=&quot;&quot;, const char aic_delimCoef=',', const char aic_delimRow=';') const</div><div class="ttdef"><b>Definition:</b> <a href="chromosome__base_8hpp_source.html#l00131">chromosome_base.hpp:131</a></div></div>
<div class="ttc" id="namespacemat_html"><div class="ttname"><a href="namespacemat.html">mat</a></div><div class="ttdoc">Matrix module and associated operations.</div></div>
<div class="ttc" id="classgaencode_1_1_chromosome_crisp_matrix_html_a478f98d9ac5c69fa21beca89fc41f75f"><div class="ttname"><a href="classgaencode_1_1_chromosome_crisp_matrix.html#a478f98d9ac5c69fa21beca89fc41f75f">gaencode::ChromosomeCrispMatrix::~ChromosomeCrispMatrix</a></div><div class="ttdeci">virtual ~ChromosomeCrispMatrix()</div><div class="ttdef"><b>Definition:</b> <a href="chromosome__crispmatrix_8hpp_source.html#l00071">chromosome_crispmatrix.hpp:71</a></div></div>
<div class="ttc" id="classmat_1_1_bit_matrix_html_ab66a697bd20fd702cb32494da920b1af"><div class="ttname"><a href="classmat_1_1_bit_matrix.html#ab66a697bd20fd702cb32494da920b1af">mat::BitMatrix::print</a></div><div class="ttdeci">virtual void print(std::ostream &amp;os=std::cout, const char *aipc_label=&quot;&quot;, const char aic_delimCoef=',', const char aic_delimRow='\n') const</div><div class="ttdef"><b>Definition:</b> <a href="bit__matrix_8hpp_source.html#l00463">bit_matrix.hpp:463</a></div></div>
<div class="ttc" id="namespacegaencode_html"><div class="ttname"><a href="namespacegaencode.html">gaencode</a></div><div class="ttdoc">Encode chromosome.</div></div>
<div class="ttc" id="classgaencode_1_1_chromosome_base_html_a875b1a929b8a9225b5545146389190f0"><div class="ttname"><a href="classgaencode_1_1_chromosome_base.html#a875b1a929b8a9225b5545146389190f0">gaencode::ChromosomeBase::operator=</a></div><div class="ttdeci">ChromosomeBase&lt; T_METRIC &gt; &amp; operator=(const ChromosomeBase&lt; T_METRIC &gt; &amp;aich_chromosome)</div><div class="ttdef"><b>Definition:</b> <a href="chromosome__base_8hpp_source.html#l00074">chromosome_base.hpp:74</a></div></div>
<div class="ttc" id="verbose__global_8hpp_html"><div class="ttname"><a href="verbose__global_8hpp.html">verbose_global.hpp</a></div><div class="ttdoc">verbose global</div></div>
<div class="ttc" id="classgaencode_1_1_chromosome_crisp_matrix_html_a6e9befdb269de13512334959c132e033"><div class="ttname"><a href="classgaencode_1_1_chromosome_crisp_matrix.html#a6e9befdb269de13512334959c132e033">gaencode::ChromosomeCrispMatrix::print</a></div><div class="ttdeci">virtual void print(std::ostream &amp;os=std::cout, const char *aipc_label=&quot;&quot;, const char aic_delimCoef=',', const char aic_delimRow='\n') const</div><div class="ttdef"><b>Definition:</b> <a href="chromosome__crispmatrix_8hpp_source.html#l00155">chromosome_crispmatrix.hpp:155</a></div></div>
<div class="ttc" id="chromosome__base_8hpp_html"><div class="ttname"><a href="chromosome__base_8hpp.html">chromosome_base.hpp</a></div><div class="ttdoc">chromosome base</div></div>
<div class="ttc" id="classmat_1_1_crisp_matrix_html"><div class="ttname"><a href="classmat_1_1_crisp_matrix.html">mat::CrispMatrix</a></div><div class="ttdoc">Bit crisp matrix.</div><div class="ttdef"><b>Definition:</b> <a href="crisp__matrix_8hpp_source.html#l00036">crisp_matrix.hpp:36</a></div></div>
<div class="ttc" id="classmat_1_1_crisp_matrix_html_aa264a099ff76971ccbe9443b081ac732"><div class="ttname"><a href="classmat_1_1_crisp_matrix.html#aa264a099ff76971ccbe9443b081ac732">mat::CrispMatrix::operator=</a></div><div class="ttdeci">mat::CrispMatrix&lt; T_BITSIZE, T_CLUSTERIDX &gt; &amp; operator=(const mat::CrispMatrix&lt; T_BITSIZE, T_CLUSTERIDX &gt; &amp;aibitcrispmatrix_B)</div><div class="ttdef"><b>Definition:</b> <a href="crisp__matrix_8hpp_source.html#l00079">crisp_matrix.hpp:79</a></div></div>
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